HMMLogo: Visualizations for profile hidden Markov models

Visualizing profile hidden Markov models (pHMMs) is easy with HMMLogo.

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Download a visualization of the pHMM with Pfam accession PF10000 with just a few lines of code:

import hmmlogo
hmmlogo.save_svg('PF10000', 'hmm.svg')

This will create a logo of the pHMM and save it as hmm.svg.

Contents:

• Installation
  • Installing with pip
  • Installing from source
• Developer Interface
  • Main Interface
  • Classes

Indices and tables

• Index

• Module Index

• Search Page