.. hmmlogo documentation master file, created by
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HMMLogo:  Visualizations for profile hidden Markov models
==================================================================

Visualizing `profile hidden Markov models (pHMMs) <https://en.wikipedia.org/wiki/HMMER#Profile_HMMs>`_ is easy with HMMLogo.

----------------------------------------

Download a visualization of the pHMM with Pfam accession ``PF10000``
with just a few lines of code::

  import hmmlogo
  hmmlogo.save_svg('PF10000', 'hmm.svg')

This will create a logo of the pHMM and save it as ``hmm.svg``.

.. image:: _static/hmm.png
  
.. toctree::
   :maxdepth: 2
   :caption: Contents:

   install
   api

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`